PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S10647.30
Common NameJCGZ_10901, LOC105637103
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 220aa    MW: 24833.2 Da    PI: 7.454
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S10647.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-183989255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr++   ++Wv+e+r+p++n  + r++lg+f t+e+Aa+a++ a+++l+g
  Jcr4S10647.30 39 FYRGVRRRN-GNKWVCEVREPNKN--KSRIWLGTFPTPEMAARAHDIAALALRG 89
                   7*****887.9******9999776..5*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.4973997IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-213999IPR016177DNA-binding domain
SMARTSM003807.6E-2839103IPR001471AP2/ERF domain
PfamPF008471.8E-124089IPR001471AP2/ERF domain
PRINTSPR003675.4E-84051IPR001471AP2/ERF domain
CDDcd000185.54E-274099No hitNo description
Gene3DG3DSA:3.30.730.101.3E-294099IPR001471AP2/ERF domain
PRINTSPR003675.4E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEFDNGSIPI SSICRFPPEV VMKKRKAGRT KFKETRHPFY RGVRRRNGNK WVCEVREPNK  60
NKSRIWLGTF PTPEMAARAH DIAALALRGD LAILNFPDSA SVLPRPKSSS AKDIKRVVRA  120
FVSTTPSVSP SSSSCSYMST TSQPYLVDHR SNDEFESCYN ETREVSESNA LFMDEEALFN  180
MPVLLDSLAE GLILTPPGIQ SGIHWNEMAF DDMELTLWEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-154097663ATERF1
3gcc_A2e-154097663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075895.11e-164PREDICTED: dehydration-responsive element-binding protein 1A-like
SwissprotQ9M0L02e-52DRE1A_ARATH; Dehydration-responsive element-binding protein 1A
TrEMBLA0A067KEP41e-164A0A067KEP4_JATCU; Uncharacterized protein
STRINGPOPTR_0009s14990.11e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.15e-42dehydration response element B1A
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]